FUNDC1 protein (Neogobius melanostomus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FUNDC1

FUN14 domain containing 1. (159 aa)

Predicted Functional Partners:

ENSNMLP00000028777

0.925

GABARAPL2

0.925

MAP1LC3B

0.924

ENSNMLP00000037648

0.924

ENSNMLP00000025897

0.915

ENSNMLP00000005340

0.902

ENSNMLP00000044421

0.893

ENSNMLP00000013339

0.882

ENSNMLP00000014467

0.865

ENSNMLP00000031997

0.865

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000005340	ENSNMLP00000013339	ENSNMLP00000005340	ENSNMLP00000013339	Zgc:92606.	Unc-51 like autophagy activating kinase 2.	0.793
ENSNMLP00000005340	ENSNMLP00000028777	ENSNMLP00000005340	ENSNMLP00000028777	Zgc:92606.	GABA(A) receptor-associated protein b.	0.840
ENSNMLP00000005340	ENSNMLP00000044421	ENSNMLP00000005340	ENSNMLP00000044421	Zgc:92606.	Unc-51 like autophagy activating kinase 1.	0.793
ENSNMLP00000005340	FUNDC1	ENSNMLP00000005340	ENSNMLP00000041265	Zgc:92606.	FUN14 domain containing 1.	0.902
ENSNMLP00000005340	GABARAPL2	ENSNMLP00000005340	ENSNMLP00000040424	Zgc:92606.	GABA type A receptor associated protein like 2.	0.845
ENSNMLP00000013339	ENSNMLP00000005340	ENSNMLP00000013339	ENSNMLP00000005340	Unc-51 like autophagy activating kinase 2.	Zgc:92606.	0.793
ENSNMLP00000013339	ENSNMLP00000028777	ENSNMLP00000013339	ENSNMLP00000028777	Unc-51 like autophagy activating kinase 2.	GABA(A) receptor-associated protein b.	0.944
ENSNMLP00000013339	ENSNMLP00000037648	ENSNMLP00000013339	ENSNMLP00000037648	Unc-51 like autophagy activating kinase 2.	Microtubule-associated protein 1 light chain 3 alpha.	0.905
ENSNMLP00000013339	ENSNMLP00000044421	ENSNMLP00000013339	ENSNMLP00000044421	Unc-51 like autophagy activating kinase 2.	Unc-51 like autophagy activating kinase 1.	0.848
ENSNMLP00000013339	FUNDC1	ENSNMLP00000013339	ENSNMLP00000041265	Unc-51 like autophagy activating kinase 2.	FUN14 domain containing 1.	0.882
ENSNMLP00000013339	GABARAPL2	ENSNMLP00000013339	ENSNMLP00000040424	Unc-51 like autophagy activating kinase 2.	GABA type A receptor associated protein like 2.	0.944
ENSNMLP00000013339	MAP1LC3B	ENSNMLP00000013339	ENSNMLP00000005837	Unc-51 like autophagy activating kinase 2.	Microtubule associated protein 1 light chain 3 beta.	0.905
ENSNMLP00000014467	ENSNMLP00000031997	ENSNMLP00000014467	ENSNMLP00000031997	annotation not available	V-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog.	0.837
ENSNMLP00000014467	FUNDC1	ENSNMLP00000014467	ENSNMLP00000041265	annotation not available	FUN14 domain containing 1.	0.865
ENSNMLP00000025897	FUNDC1	ENSNMLP00000025897	ENSNMLP00000041265	PGAM family member 5, serine/threonine protein phosphatase, mitochondrial.	FUN14 domain containing 1.	0.915
ENSNMLP00000028777	ENSNMLP00000005340	ENSNMLP00000028777	ENSNMLP00000005340	GABA(A) receptor-associated protein b.	Zgc:92606.	0.840
ENSNMLP00000028777	ENSNMLP00000013339	ENSNMLP00000028777	ENSNMLP00000013339	GABA(A) receptor-associated protein b.	Unc-51 like autophagy activating kinase 2.	0.944
ENSNMLP00000028777	ENSNMLP00000037648	ENSNMLP00000028777	ENSNMLP00000037648	GABA(A) receptor-associated protein b.	Microtubule-associated protein 1 light chain 3 alpha.	0.835
ENSNMLP00000028777	ENSNMLP00000044421	ENSNMLP00000028777	ENSNMLP00000044421	GABA(A) receptor-associated protein b.	Unc-51 like autophagy activating kinase 1.	0.944
ENSNMLP00000028777	FUNDC1	ENSNMLP00000028777	ENSNMLP00000041265	GABA(A) receptor-associated protein b.	FUN14 domain containing 1.	0.925