ENSNMLP00000042836 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000042836

Solute carrier organic anion transporter family, member 1D1. (654 aa)

Predicted Functional Partners:

ENSNMLP00000007988

0.542

ENSNMLP00000001521

0.438

ENSNMLP00000031012

0.438

ENSNMLP00000008599

0.408

ENSNMLP00000011577

0.408

ENSNMLP00000010536

0.403

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001521	ENSNMLP00000042836	Solute carrier family 16 member 10.	Solute carrier organic anion transporter family, member 1D1.	0.438
ENSNMLP00000007988	ENSNMLP00000042836	Synaptojanin 2 binding protein.	Solute carrier organic anion transporter family, member 1D1.	0.542
ENSNMLP00000008599	ENSNMLP00000010536	CWC25 spliceosome associated protein homolog.	FtsJ RNA 2'-O-methyltransferase 1.	0.808
ENSNMLP00000008599	ENSNMLP00000011577	CWC25 spliceosome associated protein homolog.	C19h1orf109 homolog (H. sapiens).	0.873
ENSNMLP00000008599	ENSNMLP00000042836	CWC25 spliceosome associated protein homolog.	Solute carrier organic anion transporter family, member 1D1.	0.408
ENSNMLP00000010536	ENSNMLP00000008599	FtsJ RNA 2'-O-methyltransferase 1.	CWC25 spliceosome associated protein homolog.	0.808
ENSNMLP00000010536	ENSNMLP00000011577	FtsJ RNA 2'-O-methyltransferase 1.	C19h1orf109 homolog (H. sapiens).	0.808
ENSNMLP00000010536	ENSNMLP00000042836	FtsJ RNA 2'-O-methyltransferase 1.	Solute carrier organic anion transporter family, member 1D1.	0.403
ENSNMLP00000011577	ENSNMLP00000008599	C19h1orf109 homolog (H. sapiens).	CWC25 spliceosome associated protein homolog.	0.873
ENSNMLP00000011577	ENSNMLP00000010536	C19h1orf109 homolog (H. sapiens).	FtsJ RNA 2'-O-methyltransferase 1.	0.808
ENSNMLP00000011577	ENSNMLP00000042836	C19h1orf109 homolog (H. sapiens).	Solute carrier organic anion transporter family, member 1D1.	0.408
ENSNMLP00000031012	ENSNMLP00000042836	annotation not available	Solute carrier organic anion transporter family, member 1D1.	0.438
ENSNMLP00000042836	ENSNMLP00000001521	Solute carrier organic anion transporter family, member 1D1.	Solute carrier family 16 member 10.	0.438
ENSNMLP00000042836	ENSNMLP00000007988	Solute carrier organic anion transporter family, member 1D1.	Synaptojanin 2 binding protein.	0.542
ENSNMLP00000042836	ENSNMLP00000008599	Solute carrier organic anion transporter family, member 1D1.	CWC25 spliceosome associated protein homolog.	0.408
ENSNMLP00000042836	ENSNMLP00000010536	Solute carrier organic anion transporter family, member 1D1.	FtsJ RNA 2'-O-methyltransferase 1.	0.403
ENSNMLP00000042836	ENSNMLP00000011577	Solute carrier organic anion transporter family, member 1D1.	C19h1orf109 homolog (H. sapiens).	0.408
ENSNMLP00000042836	ENSNMLP00000031012	Solute carrier organic anion transporter family, member 1D1.	annotation not available	0.438