ENSNMLP00000043008 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000043008

Mitochondrial calcium uptake 1. (491 aa)

Predicted Functional Partners:

ENSNMLP00000019481

0.995

ENSNMLP00000003087

0.988

ENSNMLP00000004192

0.988

MCUB

0.986

ENSNMLP00000042957

0.986

ENSNMLP00000010951

0.938

ENSNMLP00000037010

0.938

ENSNMLP00000034748

0.884

ENSNMLP00000007054

0.788

ENSNMLP00000040462

0.759

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNMLP00000003087	ENSNMLP00000007054	ENSNMLP00000003087	ENSNMLP00000007054	Single-pass membrane protein with aspartate-rich tail 1b.	Si:ch1073-174d20.2.	0.799
ENSNMLP00000003087	ENSNMLP00000010951	ENSNMLP00000003087	ENSNMLP00000010951	Single-pass membrane protein with aspartate-rich tail 1b.	Mitochondrial calcium uptake family, member 3b.	0.844
ENSNMLP00000003087	ENSNMLP00000019481	ENSNMLP00000003087	ENSNMLP00000019481	Single-pass membrane protein with aspartate-rich tail 1b.	Mitochondrial calcium uptake 2.	0.984
ENSNMLP00000003087	ENSNMLP00000034748	ENSNMLP00000003087	ENSNMLP00000034748	Single-pass membrane protein with aspartate-rich tail 1b.	Prohibitin 2b.	0.644
ENSNMLP00000003087	ENSNMLP00000037010	ENSNMLP00000003087	ENSNMLP00000037010	Single-pass membrane protein with aspartate-rich tail 1b.	Mitochondrial calcium uptake family, member 3a.	0.844
ENSNMLP00000003087	ENSNMLP00000040462	ENSNMLP00000003087	ENSNMLP00000040462	Single-pass membrane protein with aspartate-rich tail 1b.	Prohibitin.	0.646
ENSNMLP00000003087	ENSNMLP00000042957	ENSNMLP00000003087	ENSNMLP00000042957	Single-pass membrane protein with aspartate-rich tail 1b.	Mitochondrial calcium uniporter.	0.961
ENSNMLP00000003087	ENSNMLP00000043008	ENSNMLP00000003087	ENSNMLP00000043008	Single-pass membrane protein with aspartate-rich tail 1b.	Mitochondrial calcium uptake 1.	0.988
ENSNMLP00000003087	MCUB	ENSNMLP00000003087	ENSNMLP00000022924	Single-pass membrane protein with aspartate-rich tail 1b.	Mitochondrial calcium uniporter dominant negative beta subunit.	0.961
ENSNMLP00000004192	ENSNMLP00000007054	ENSNMLP00000004192	ENSNMLP00000007054	Single-pass membrane protein with aspartate-rich tail 1a.	Si:ch1073-174d20.2.	0.799
ENSNMLP00000004192	ENSNMLP00000010951	ENSNMLP00000004192	ENSNMLP00000010951	Single-pass membrane protein with aspartate-rich tail 1a.	Mitochondrial calcium uptake family, member 3b.	0.844
ENSNMLP00000004192	ENSNMLP00000019481	ENSNMLP00000004192	ENSNMLP00000019481	Single-pass membrane protein with aspartate-rich tail 1a.	Mitochondrial calcium uptake 2.	0.984
ENSNMLP00000004192	ENSNMLP00000034748	ENSNMLP00000004192	ENSNMLP00000034748	Single-pass membrane protein with aspartate-rich tail 1a.	Prohibitin 2b.	0.644
ENSNMLP00000004192	ENSNMLP00000037010	ENSNMLP00000004192	ENSNMLP00000037010	Single-pass membrane protein with aspartate-rich tail 1a.	Mitochondrial calcium uptake family, member 3a.	0.844
ENSNMLP00000004192	ENSNMLP00000040462	ENSNMLP00000004192	ENSNMLP00000040462	Single-pass membrane protein with aspartate-rich tail 1a.	Prohibitin.	0.646
ENSNMLP00000004192	ENSNMLP00000042957	ENSNMLP00000004192	ENSNMLP00000042957	Single-pass membrane protein with aspartate-rich tail 1a.	Mitochondrial calcium uniporter.	0.961
ENSNMLP00000004192	ENSNMLP00000043008	ENSNMLP00000004192	ENSNMLP00000043008	Single-pass membrane protein with aspartate-rich tail 1a.	Mitochondrial calcium uptake 1.	0.988
ENSNMLP00000004192	MCUB	ENSNMLP00000004192	ENSNMLP00000022924	Single-pass membrane protein with aspartate-rich tail 1a.	Mitochondrial calcium uniporter dominant negative beta subunit.	0.961
ENSNMLP00000007054	ENSNMLP00000003087	ENSNMLP00000007054	ENSNMLP00000003087	Si:ch1073-174d20.2.	Single-pass membrane protein with aspartate-rich tail 1b.	0.799
ENSNMLP00000007054	ENSNMLP00000004192	ENSNMLP00000007054	ENSNMLP00000004192	Si:ch1073-174d20.2.	Single-pass membrane protein with aspartate-rich tail 1a.	0.799