ENSNMLP00000043369 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000043369

Dimethylglycine dehydrogenase. (871 aa)

Predicted Functional Partners:

ENSNMLP00000037925

0.990

ENSNMLP00000000579

0.982

ENSNMLP00000009513

0.982

ENSNMLP00000010630

0.982

ENSNMLP00000014340

0.965

ENSNMLP00000020255

0.960

ENSNMLP00000042255

0.960

ENSNMLP00000025899

0.942

ENSNMLP00000034699

0.942

ENSNMLP00000018399

0.936

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000000579	ENSNMLP00000009513	Glycine cleavage system protein H (aminomethyl carrier), b.	annotation not available	0.823
ENSNMLP00000000579	ENSNMLP00000014340	Glycine cleavage system protein H (aminomethyl carrier), b.	Pipecolic acid oxidase.	0.635
ENSNMLP00000000579	ENSNMLP00000018399	Glycine cleavage system protein H (aminomethyl carrier), b.	annotation not available	0.685
ENSNMLP00000000579	ENSNMLP00000020255	Glycine cleavage system protein H (aminomethyl carrier), b.	Zgc:172341.	0.630
ENSNMLP00000000579	ENSNMLP00000037925	Glycine cleavage system protein H (aminomethyl carrier), b.	Glycine dehydrogenase (decarboxylating).	0.993
ENSNMLP00000000579	ENSNMLP00000042255	Glycine cleavage system protein H (aminomethyl carrier), b.	D-amino-acid oxidase, tandem duplicate 2.	0.630
ENSNMLP00000000579	ENSNMLP00000043369	Glycine cleavage system protein H (aminomethyl carrier), b.	Dimethylglycine dehydrogenase.	0.982
ENSNMLP00000009513	ENSNMLP00000000579	annotation not available	Glycine cleavage system protein H (aminomethyl carrier), b.	0.823
ENSNMLP00000009513	ENSNMLP00000010630	annotation not available	Glycine cleavage system protein H (aminomethyl carrier), b.	0.827
ENSNMLP00000009513	ENSNMLP00000014340	annotation not available	Pipecolic acid oxidase.	0.635
ENSNMLP00000009513	ENSNMLP00000018399	annotation not available	annotation not available	0.685
ENSNMLP00000009513	ENSNMLP00000020255	annotation not available	Zgc:172341.	0.630
ENSNMLP00000009513	ENSNMLP00000037925	annotation not available	Glycine dehydrogenase (decarboxylating).	0.993
ENSNMLP00000009513	ENSNMLP00000042255	annotation not available	D-amino-acid oxidase, tandem duplicate 2.	0.630
ENSNMLP00000009513	ENSNMLP00000043369	annotation not available	Dimethylglycine dehydrogenase.	0.982
ENSNMLP00000010630	ENSNMLP00000009513	Glycine cleavage system protein H (aminomethyl carrier), b.	annotation not available	0.827
ENSNMLP00000010630	ENSNMLP00000014340	Glycine cleavage system protein H (aminomethyl carrier), b.	Pipecolic acid oxidase.	0.635
ENSNMLP00000010630	ENSNMLP00000018399	Glycine cleavage system protein H (aminomethyl carrier), b.	annotation not available	0.685
ENSNMLP00000010630	ENSNMLP00000020255	Glycine cleavage system protein H (aminomethyl carrier), b.	Zgc:172341.	0.630
ENSNMLP00000010630	ENSNMLP00000037925	Glycine cleavage system protein H (aminomethyl carrier), b.	Glycine dehydrogenase (decarboxylating).	0.993