ENSNMLP00000043985 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000043985

annotation not available (231 aa)

Predicted Functional Partners:

ENSNMLP00000023496

0.925

ENSNMLP00000036769

0.909

ENSNMLP00000043539

0.903

ENSNMLP00000024058

0.902

ENSNMLP00000027501

0.899

ENSNMLP00000026051

0.886

ENSNMLP00000045093

0.877

ENSNMLP00000029992

0.860

ENSNMLP00000016875

0.857

ENSNMLP00000036996

0.854

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000016875	ENSNMLP00000023496	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	Pseudouridine 5'-phosphatase.	0.842
ENSNMLP00000016875	ENSNMLP00000024058	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	5'-nucleotidase, ecto (CD73).	0.917
ENSNMLP00000016875	ENSNMLP00000043539	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	Phosphoserine aminotransferase 1.	0.682
ENSNMLP00000016875	ENSNMLP00000043985	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	annotation not available	0.857
ENSNMLP00000023496	ENSNMLP00000016875	Pseudouridine 5'-phosphatase.	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	0.842
ENSNMLP00000023496	ENSNMLP00000024058	Pseudouridine 5'-phosphatase.	5'-nucleotidase, ecto (CD73).	0.524
ENSNMLP00000023496	ENSNMLP00000027501	Pseudouridine 5'-phosphatase.	Riboflavin kinase.	0.890
ENSNMLP00000023496	ENSNMLP00000029992	Pseudouridine 5'-phosphatase.	Nudix (nucleoside diphosphate linked moiety X)-type motif 12.	0.861
ENSNMLP00000023496	ENSNMLP00000036996	Pseudouridine 5'-phosphatase.	Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.	0.785
ENSNMLP00000023496	ENSNMLP00000043985	Pseudouridine 5'-phosphatase.	annotation not available	0.925
ENSNMLP00000023496	ENSNMLP00000045093	Pseudouridine 5'-phosphatase.	Nicotinate phosphoribosyltransferase.	0.723
ENSNMLP00000024058	ENSNMLP00000016875	5'-nucleotidase, ecto (CD73).	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	0.917
ENSNMLP00000024058	ENSNMLP00000023496	5'-nucleotidase, ecto (CD73).	Pseudouridine 5'-phosphatase.	0.524
ENSNMLP00000024058	ENSNMLP00000029992	5'-nucleotidase, ecto (CD73).	Nudix (nucleoside diphosphate linked moiety X)-type motif 12.	0.874
ENSNMLP00000024058	ENSNMLP00000043985	5'-nucleotidase, ecto (CD73).	annotation not available	0.902
ENSNMLP00000024058	ENSNMLP00000045093	5'-nucleotidase, ecto (CD73).	Nicotinate phosphoribosyltransferase.	0.886
ENSNMLP00000026051	ENSNMLP00000043985	Membrane bound O-acyltransferase domain containing 2a.	annotation not available	0.886
ENSNMLP00000027501	ENSNMLP00000023496	Riboflavin kinase.	Pseudouridine 5'-phosphatase.	0.890
ENSNMLP00000027501	ENSNMLP00000029992	Riboflavin kinase.	Nudix (nucleoside diphosphate linked moiety X)-type motif 12.	0.907
ENSNMLP00000027501	ENSNMLP00000043539	Riboflavin kinase.	Phosphoserine aminotransferase 1.	0.545