ENSNMLP00000044111 protein (Neogobius melanostomus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNMLP00000044111

annotation not available (128 aa)

Predicted Functional Partners:

ENSNMLP00000001409

0.986

ENSNMLP00000042437

0.986

ENSNMLP00000013206

0.912

ENSNMLP00000003663

0.892

ENSNMLP00000005044

0.891

ENSNMLP00000016612

0.891

ENSNMLP00000044228

0.891

ENSNMLP00000006368

0.854

ENSNMLP00000021697

0.840

ENSNMLP00000028536

0.840

Your Current Organism:

Neogobius melanostomus

NCBI taxonomy Id: 47308
Other names: Apollonia melanostoma, Apollonia melanostomus, Gobius melanostomus, N. melanostomus, round goby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSNMLP00000001409	ENSNMLP00000003663	Dihydroorotate dehydrogenase.	Cytochrome b5 reductase 4.	0.997
ENSNMLP00000001409	ENSNMLP00000005044	Dihydroorotate dehydrogenase.	Cytochrome b5 reductase 2.	0.995
ENSNMLP00000001409	ENSNMLP00000006368	Dihydroorotate dehydrogenase.	Guanine monophosphate synthase.	0.966
ENSNMLP00000001409	ENSNMLP00000013206	Dihydroorotate dehydrogenase.	Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).	0.941
ENSNMLP00000001409	ENSNMLP00000016612	Dihydroorotate dehydrogenase.	Oxidoreductase NAD-binding domain containing 1.	0.995
ENSNMLP00000001409	ENSNMLP00000021697	Dihydroorotate dehydrogenase.	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	0.992
ENSNMLP00000001409	ENSNMLP00000028536	Dihydroorotate dehydrogenase.	G protein-coupled receptor 143.	0.988
ENSNMLP00000001409	ENSNMLP00000042437	Dihydroorotate dehydrogenase.	Uridine monophosphate synthetase.	0.999
ENSNMLP00000001409	ENSNMLP00000044111	Dihydroorotate dehydrogenase.	annotation not available	0.986
ENSNMLP00000001409	ENSNMLP00000044228	Dihydroorotate dehydrogenase.	Cytochrome b5 reductase 3.	0.995
ENSNMLP00000003663	ENSNMLP00000001409	Cytochrome b5 reductase 4.	Dihydroorotate dehydrogenase.	0.997
ENSNMLP00000003663	ENSNMLP00000005044	Cytochrome b5 reductase 4.	Cytochrome b5 reductase 2.	0.909
ENSNMLP00000003663	ENSNMLP00000006368	Cytochrome b5 reductase 4.	Guanine monophosphate synthase.	0.764
ENSNMLP00000003663	ENSNMLP00000016612	Cytochrome b5 reductase 4.	Oxidoreductase NAD-binding domain containing 1.	0.837
ENSNMLP00000003663	ENSNMLP00000021697	Cytochrome b5 reductase 4.	Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase.	0.958
ENSNMLP00000003663	ENSNMLP00000028536	Cytochrome b5 reductase 4.	G protein-coupled receptor 143.	0.958
ENSNMLP00000003663	ENSNMLP00000042437	Cytochrome b5 reductase 4.	Uridine monophosphate synthetase.	0.985
ENSNMLP00000003663	ENSNMLP00000044111	Cytochrome b5 reductase 4.	annotation not available	0.892
ENSNMLP00000003663	ENSNMLP00000044228	Cytochrome b5 reductase 4.	Cytochrome b5 reductase 3.	0.909
ENSNMLP00000005044	ENSNMLP00000001409	Cytochrome b5 reductase 2.	Dihydroorotate dehydrogenase.	0.995