STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ42738.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (259 aa)    
Predicted Functional Partners:
SDQ42765.1
Signal transduction histidine kinase.
 0.976
SDR24485.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.953
SDR21215.1
Two-component system, OmpR family, sensor histidine kinase MprB.
 0.940
SDR29100.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 
 0.927
SDQ58009.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.912
SDQ58251.1
Two-component system, OmpR family, sensor kinase.
 0.912
SDR29146.1
Signal transduction histidine kinase.
 0.905
SDR16443.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 0.889
SDR26937.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.826
SDR19843.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
 
 0.804
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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