STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ56536.12,3-dihydro-2,3-dihydroxybenzoate dehydrogenase. (249 aa)    
Predicted Functional Partners:
SDQ56584.1
Bifunctional isochorismate lyase / aryl carrier protein.
 
 0.997
SDQ56560.1
2,3-dihydroxybenzoate-AMP ligase.
 0.994
SDQ73522.1
Fatty acid synthase.
  
 0.976
SDQ75019.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 0.927
SDQ56393.1
Nonribosomal peptide synthetase DhbF; Non-canonical start codon; manually curated.
 
 0.866
SDQ56607.1
Isochorismate synthase.
 
  
 0.859
SDQ96896.1
Hypothetical protein.
 
 0.857
SDQ56514.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
 
     0.832
SDR26131.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
  
  0.817
SDQ56466.1
Putative ABC transport system ATP-binding protein.
   
  0.796
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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