STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ61578.1Nitroreductase. (236 aa)    
Predicted Functional Partners:
SDQ61528.1
Hypothetical protein.
 
    0.801
SDQ61552.1
Protein of unknown function.
       0.773
SDQ81796.1
uroporphyrinogen-III C-methyltransferase.
    
 0.709
SDR24301.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.676
SDR15650.1
Adenylyltransferase and sulfurtransferase.
    
  0.620
SDR07617.1
Probable phosphoglycerate mutase.
    
  0.606
cobT
Adenosylcobinamide kinase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
 
  
 0.573
SDQ61503.1
O-Methyltransferase involved in polyketide biosynthesis.
       0.553
SDQ61602.1
Hypothetical protein.
       0.493
SDQ74773.1
uroporphyrinogen-III synthase.
  
 
 0.486
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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