STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ67978.1DNA-binding transcriptional regulator, MarR family. (147 aa)    
Predicted Functional Partners:
SDQ49263.1
Metabolite-proton symporter.
      
 0.730
SDQ68000.1
Putative intracellular protease/amidase.
       0.546
SDR26937.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
   
 0.539
SDR21636.1
Uncharacterized conserved protein YegL, contains vWA domain of TerY type.
  
     0.538
SDQ48100.1
Acyl dehydratase.
 
   
 0.535
SDQ94863.1
PPOX class probable F420-dependent enzyme.
 
     0.486
SDQ86106.1
Acyl dehydratase.
     
 0.475
SDR14461.1
Protein of unknown function.
  
     0.464
SDQ68063.1
Protein of unknown function.
 
     0.451
SDR26947.1
Thioredoxin reductase (NADPH).
  
   
 0.427
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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