STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ68776.1DNA-binding transcriptional regulator, FadR family. (225 aa)    
Predicted Functional Partners:
SDQ72371.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.748
SDQ96209.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.659
SDQ91082.1
Transcriptional regulator, GntR family.
  
    0.655
SDR23056.1
Transcriptional regulator, GntR family.
  
    0.651
SDQ92474.1
GntR family transcriptional regulator.
  
    0.534
SDR14649.1
DNA-binding transcriptional regulator, IclR family.
  
  
 0.532
SDR22265.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
  
 0.524
leuA-2
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
  
    0.518
SDQ44994.1
Ferredoxin-NADP reductase.
    
  0.470
SDQ51585.1
3-ketosteroid 9alpha-monooxygenase subunit B.
    
  0.470
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.