STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ70720.1Protein N-acetyltransferase, RimJ/RimL family. (207 aa)    
Predicted Functional Partners:
SDR24198.1
Hypothetical protein.
 
      0.896
SDQ70741.1
Helicase conserved C-terminal domain-containing protein.
       0.773
SDQ70766.1
Uncharacterized conserved protein, contains Zn finger domain.
       0.773
SDQ70694.1
(3S)-malyl-CoA thioesterase.
       0.757
SDQ54595.1
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.689
SDR22816.1
Protein N-acetyltransferase, RimJ/RimL family.
  
     0.678
glmS
Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
      0.651
SDQ74076.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.624
SDR28959.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.624
SDQ70791.1
DNA repair exonuclease SbcCD nuclease subunit.
       0.570
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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