STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ71530.1phospholipid/cholesterol/gamma-HCH transport system permease protein. (285 aa)    
Predicted Functional Partners:
SDR13902.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.973
SDR23481.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
  0.961
SDQ71460.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
  0.960
SDQ71383.1
Virulence factor Mce family protein.
 
 0.953
SDQ71436.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.953
SDQ71413.1
Virulence factor Mce family protein.
 
 0.951
SDQ71358.1
Virulence factor Mce family protein.
 
  0.947
SDR13844.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.935
SDR13825.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
  0.933
SDR13806.1
Virulence factor Mce family protein.
 
 0.917
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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