STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ77699.1PTS system unknown substrate IIB component, Gat family. (95 aa)    
Predicted Functional Partners:
SDQ77675.1
PTS system IIC component, Gat family.
 
 
 0.991
SDQ77648.1
PTS system IIA component, Gat family.
 
 
 0.988
SDR28101.1
PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
 
 
 0.862
SDQ77727.1
Putative aminopeptidase FrvX.
 
     0.801
SDQ77751.1
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family.
     
 0.780
SDR28092.1
Phosphocarrier protein.
    
  0.709
SDR01183.1
MarR family protein.
 
     0.485
SDQ97222.1
Threonine dehydrogenase.
 
 
 0.435
SDQ77778.1
2-Methylisocitrate lyase, PEP mutase family.
       0.424
SDQ83265.1
(R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase.
 
 
 0.422
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.