STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ86106.1Acyl dehydratase. (150 aa)    
Predicted Functional Partners:
SDQ86026.1
NADPH2:quinone reductase.
  0.936
SDQ86136.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
 
   0.859
SDQ73522.1
Fatty acid synthase.
    
 0.837
SDQ86159.1
acyl-CoA dehydrogenase.
 
  0.835
SDQ86187.1
Acyl-CoA dehydrogenase.
 
  0.822
SDQ86213.1
Acyl-CoA dehydrogenase.
  
  0.798
SDQ61303.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase B.
  
 0.757
SDQ61278.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase A.
  
 0.756
SDQ61352.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase D.
  
 0.756
SDQ85998.1
Short-chain dehydrogenase.
 
  
  0.724
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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