STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ89793.1Hypothetical protein. (72 aa)    
Predicted Functional Partners:
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.941
SDQ89821.1
Protein of unknown function.
       0.752
SDQ89845.1
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain.
       0.651
SDR16814.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
  
     0.591
SDR27674.1
Type VII secretion protein EccB.
  
     0.581
SDQ87720.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
  
     0.518
SDQ89740.1
PAP2 superfamily protein.
       0.516
SDQ60417.1
Acyl-[acyl-carrier-protein] desaturase.
  
     0.477
SDQ44970.1
Hypothetical protein.
  
     0.469
SDQ08474.1
Hypothetical protein.
  
     0.466
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.