STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ91082.1Transcriptional regulator, GntR family. (243 aa)    
Predicted Functional Partners:
SDQ95459.1
DNA-binding transcriptional regulator, FadR family.
  
    0.776
SDQ92474.1
GntR family transcriptional regulator.
  
     0.775
SDQ68776.1
DNA-binding transcriptional regulator, FadR family.
  
    0.655
SDQ91032.1
BadF-type ATPase.
 
     0.634
SDQ59832.1
Transcriptional regulator, LacI family.
  
   
 0.574
SDR23146.1
N-acetylglucosamine 6-phosphate deacetylase.
 
  
 0.566
SDQ91055.1
MFS transporter, sugar porter (SP) family; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.545
SDR28594.1
DNA-binding transcriptional regulator YbjK.
   
    0.528
SDR28006.1
LysR family transcriptional regulator, chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
   
    0.511
SDR28636.1
Cell envelope-related function transcriptional attenuator common domain-containing protein.
   
    0.495
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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