STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ97222.1Threonine dehydrogenase. (388 aa)    
Predicted Functional Partners:
SDQ99986.1
Aryl-alcohol dehydrogenase.
 
 
 0.860
SDR28101.1
PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
  
 
 0.860
SDQ89688.1
8-amino-7-oxononanoate synthase.
  
 
 0.796
SDQ97244.1
Exodeoxyribonuclease-3.
       0.752
SDR14537.1
Phosphoglucomutase.
   
 0.744
SDQ62460.1
Alcohol dehydrogenase.
  
 
 0.734
SDR01114.1
Xylulokinase; Belongs to the FGGY kinase family.
  
 
 0.692
SDQ97573.1
D-arabinose 1-dehydrogenase, Zn-dependent alcohol dehydrogenase family.
0.667
SDR01137.1
Mannitol 2-dehydrogenase.
    
 0.665
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 0.659
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.