STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR00995.1Regulatory protein, tetR family. (257 aa)    
Predicted Functional Partners:
SDR04305.1
Tetracyclin repressor, C-terminal all-alpha domain.
  
     0.588
SDR01021.1
Helicase conserved C-terminal domain-containing protein.
       0.558
SDR01042.1
SWIM zinc finger.
       0.558
SDR18020.1
HicB family protein.
  
     0.551
SDQ52700.1
Predicted ATPase.
  
  
 0.525
SDQ46397.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.505
SDR28640.1
Regulatory protein, tetR family.
  
     0.492
SDR18037.1
Putative adhesin.
  
     0.482
SDQ92812.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.472
SDQ80822.1
Regulatory protein, tetR family.
  
     0.422
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.