STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR03069.1ABC-2 type transport system permease protein. (261 aa)    
Predicted Functional Partners:
SDR03090.1
Cytochrome c oxidase assembly protein subunit 15.
   
 0.963
SDR03056.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.925
SDR03039.1
Alpha-1,6-mannosyltransferase.
 
   
 0.922
SDR03020.1
Predicted transcriptional regulator, ArsR family.
 
     0.720
SDR02983.1
Fe-S cluster assembly protein SufD.
       0.678
SDR03002.1
Iron-regulated ABC transporter membrane component SufB.
       0.678
SDR02964.1
Iron-regulated ABC transporter ATPase subunit SufC.
     
 0.661
SDR02906.1
Metal-sulfur cluster biosynthetic enzyme.
       0.660
SDR02924.1
FeS assembly scaffold apoprotein IscU.
       0.660
SDR03110.1
Hypothetical protein.
       0.642
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.