STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR07593.1ABC-2 type transport system ATP-binding protein. (328 aa)    
Predicted Functional Partners:
SDR07574.1
ABC transporter efflux protein, DrrB family.
 
 0.964
SDQ61452.1
ABC-2 type transport system permease protein.
 
 0.856
SDQ52728.1
ABC-2 type transport system permease protein.
 
 
 0.849
SDQ47579.1
ABC-2 type transport system permease protein.
 
 
 0.847
SDQ61429.1
ABC-2 type transport system permease protein.
 
 
 0.827
SDR18072.1
ABC-2 type transport system permease protein.
 
 
 0.807
SDR07555.1
Acyl-ACP thioesterase.
       0.768
SDR07516.1
Cutinase.
   
   0.747
SDR07534.1
Exoribonuclease R.
       0.726
SDQ60640.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
   
 
0.659
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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