Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDR10076.1Hypothetical protein. (242 aa)    
Predicted Functional Partners:
SDR10054.1
EDD domain protein, DegV family.
     
 0.892
SDR10093.1
Glucosyl-3-phosphoglycerate phosphatase (pgm family); Belongs to the phosphoglycerate mutase family.
  
  
 0.890
rsfS
Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.826
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.826
SDR12824.1
Acetyltransferase (isoleucine patch superfamily).
 
   
 0.820
SDR12728.1
Methyltransferase domain-containing protein.
  
   
 0.816
SDR12749.1
1,4-alpha-glucan branching enzyme; Belongs to the glycosyl hydrolase 57 family.
  
   
 0.796
SDR06355.1
Hypothetical protein.
  
     0.774
SDR12768.1
(1->4)-alpha-D-glucan synthase (UDP-glucose).
  
   
 0.773
SDQ67307.1
Hypothetical protein.
  
     0.772
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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