STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR12433.1Hypothetical protein; Manually curated. (272 aa)    
Predicted Functional Partners:
SDQ48898.1
Glyoxylase, beta-lactamase superfamily II.
     0.965
SDR12369.1
Cysteine desulfurase.
    
  0.679
SDR15650.1
Adenylyltransferase and sulfurtransferase.
  
 0.653
SDQ74265.1
2,4-dienoyl-CoA reductase.
  
 
  0.602
SDR12495.1
Hypothetical protein.
       0.596
SDR12392.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
       0.523
SDR12412.1
Putative hemolysin.
       0.523
SDQ93983.1
Thioesterase-like superfamily protein.
  
     0.514
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
     0.503
SDR24770.1
Putative sensory transduction regulator.
  
    0.471
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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