STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR16878.1PH domain-containing protein. (181 aa)    
Predicted Functional Partners:
SDR16863.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.836
SDR16894.1
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
       0.836
SDR16943.1
Septum formation protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.677
SDQ73836.1
Hypothetical protein.
  
  
 0.627
SDR16848.1
Cholesterol oxidase.
       0.620
SDR16926.1
Acyl-CoA carboxylase epsilon subunit.
       0.612
SDR16911.1
propionyl-CoA carboxylase beta chain.
       0.586
SDQ70276.1
Hypothetical protein.
  
    0.557
SDR06491.1
DNA polymerase-3 subunit epsilon.
 
     0.516
SDQ75341.1
TLP18.3, Psb32 and MOLO-1 founding protein of phosphatase.
  
    0.418
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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