node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDQ40487.1 | rplC | SAMN04489765_0280 | SAMN04489765_1174 | PELOTA RNA binding domain-containing protein. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.998 |
SDQ40487.1 | rplD | SAMN04489765_0280 | SAMN04489765_1175 | PELOTA RNA binding domain-containing protein. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
SDQ40487.1 | rplF | SAMN04489765_0280 | SAMN04489765_1203 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.998 |
SDQ40487.1 | rplJ | SAMN04489765_0280 | SAMN04489765_4070 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
SDQ40487.1 | rplP | SAMN04489765_0280 | SAMN04489765_1181 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.997 |
SDQ40487.1 | rplV | SAMN04489765_0280 | SAMN04489765_1179 | PELOTA RNA binding domain-containing protein. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
SDQ40487.1 | rplW | SAMN04489765_0280 | SAMN04489765_1176 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
SDQ40487.1 | rplX | SAMN04489765_0280 | SAMN04489765_1193 | PELOTA RNA binding domain-containing protein. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.998 |
SDQ40487.1 | rpmC | SAMN04489765_0280 | SAMN04489765_1182 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.998 |
rplC | SDQ40487.1 | SAMN04489765_1174 | SAMN04489765_0280 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | PELOTA RNA binding domain-containing protein. | 0.998 |
rplC | rplD | SAMN04489765_1174 | SAMN04489765_1175 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplF | SAMN04489765_1174 | SAMN04489765_1203 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
rplC | rplJ | SAMN04489765_1174 | SAMN04489765_4070 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
rplC | rplP | SAMN04489765_1174 | SAMN04489765_1181 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rplV | SAMN04489765_1174 | SAMN04489765_1179 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplC | rplW | SAMN04489765_1174 | SAMN04489765_1176 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplC | rplX | SAMN04489765_1174 | SAMN04489765_1193 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
rplC | rpmC | SAMN04489765_1174 | SAMN04489765_1182 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
rplC | rpsF | SAMN04489765_1174 | SAMN04489765_0326 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplD | SDQ40487.1 | SAMN04489765_1175 | SAMN04489765_0280 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | PELOTA RNA binding domain-containing protein. | 0.999 |