node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDR24379.1 | rplC | SAMN04489765_4157 | SAMN04489765_1174 | Protein of unknown function. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
SDR24379.1 | rplD | SAMN04489765_4157 | SAMN04489765_1175 | Protein of unknown function. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
SDR24379.1 | rplR | SAMN04489765_4157 | SAMN04489765_1204 | Protein of unknown function. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
SDR24379.1 | rpmB | SAMN04489765_4157 | SAMN04489765_3251 | Protein of unknown function. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
SDR24379.1 | rpmG-2 | SAMN04489765_4157 | SAMN04489765_4083 | Protein of unknown function. | LSU ribosomal protein L33P; Manually curated; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
SDR24379.1 | rpmI | SAMN04489765_4157 | SAMN04489765_2735 | Protein of unknown function. | LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
SDR24379.1 | rpmJ | SAMN04489765_4157 | SAMN04489765_1217 | Protein of unknown function. | LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
SDR24379.1 | rpsF | SAMN04489765_4157 | SAMN04489765_0326 | Protein of unknown function. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
SDR24379.1 | rpsG | SAMN04489765_4157 | SAMN04489765_1154 | Protein of unknown function. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
SDR24379.1 | rpsJ | SAMN04489765_4157 | SAMN04489765_1173 | Protein of unknown function. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rplC | SDR24379.1 | SAMN04489765_1174 | SAMN04489765_4157 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Protein of unknown function. | 0.999 |
rplC | rplD | SAMN04489765_1174 | SAMN04489765_1175 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplR | SAMN04489765_1174 | SAMN04489765_1204 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplC | rpmB | SAMN04489765_1174 | SAMN04489765_3251 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.997 |
rplC | rpmG-2 | SAMN04489765_1174 | SAMN04489765_4083 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L33P; Manually curated; Belongs to the bacterial ribosomal protein bL33 family. | 0.997 |
rplC | rpmI | SAMN04489765_1174 | SAMN04489765_2735 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. | 0.998 |
rplC | rpmJ | SAMN04489765_1174 | SAMN04489765_1217 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | 0.998 |
rplC | rpsF | SAMN04489765_1174 | SAMN04489765_0326 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplC | rpsG | SAMN04489765_1174 | SAMN04489765_1154 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rplC | rpsJ | SAMN04489765_1174 | SAMN04489765_1173 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |