STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR27216.1Thioredoxin. (234 aa)    
Predicted Functional Partners:
SDR27226.1
Cytochrome c biogenesis protein CcdA.
 
   
 0.970
SDR27237.1
Hypothetical protein.
 
     0.839
SDR27257.1
Peptidase family M48.
 
     0.806
SDR27246.1
Predicted transcriptional regulator.
 
     0.799
SDQ67590.1
Thioredoxin-like.
  
 
 0.619
SDR27205.1
Putative oxidoreductase.
 
     0.613
SDQ95499.1
Uncharacterized membrane protein.
  
  
 0.518
SDQ49049.1
Thiol-disulfide isomerase or thioredoxin.
  
 
 0.448
SDR25034.1
Predicted dithiol-disulfide isomerase, DsbA family.
     
 0.423
SDQ76587.1
Uncharacterized membrane protein.
  
     0.401
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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