STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR28379.1Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family. (306 aa)    
Predicted Functional Partners:
SDR28367.1
Arabinofuranosyltransferase; Manually curated.
 
  
 0.962
SDQ44103.1
decaprenylphospho-beta-D-ribofuranose 2-oxidase.
 
  
 0.951
SDR28395.1
galactofuranosylgalactofuranosylrhamnosyl-N- acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase.
  
  
 0.941
SDR28388.1
5'-phosphoribosyl-monophospho-decaprenol phosphatase.
 
  
 0.940
SDR28356.1
FAD/FMN-containing dehydrogenase.
    
 0.931
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 0.836
SDR28407.1
UDP-galactopyranose mutase.
       0.836
SDQ44078.1
decaprenylphospho-beta-D-erythro-pentofuranosid- 2-ulose 2-reductase.
 
  
 0.802
SDQ94668.1
Short-chain dehydrogenase.
 
    0.774
SDR28350.1
Hypothetical protein.
       0.773
Your Current Organism:
Tsukamurella pulmonis
NCBI taxonomy Id: 47312
Other names: ATCC 700081, CCUG 35732, CIP 104791, DSM 44142, DSM 44990 [[Tsukamurella spongiae]], JCM 10111, JCM 14882 [[Tsukamurella spongiae]], NCTC 13230, NRRL B-24467 [[Tsukamurella spongiae]], T. pulmonis, Tsukamurella sp. K362, Tsukamurella spongiae, Tsukamurella spongiae Olson et al. 2007, strain K362 [[Tsukamurella spongiae]]
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