A0A2H3DFG9 protein (Armillaria gallica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2H3DFG9

Uncharacterized protein. (326 aa)

Predicted Functional Partners:

A0A2H3E5G5

0.798

A0A2H3E3N4

0.779

A0A2H3EK73

0.763

A0A2H3E7F4

0.756

A0A2H3E3U1

0.755

A0A2H3E2G6

0.709

A0A2H3DJF4

0.684

A0A2H3ECS2

0.684

A0A2H3DLX0

0.668

A0A2H3E3K8

0.668

Your Current Organism:

Armillaria gallica

NCBI taxonomy Id: 47427
Other names: A. gallica, Armillaria bulbosa, Armillaria lutea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2H3DFG9	A0A2H3DJF4	Uncharacterized protein.	Uncharacterized protein.	0.684
A0A2H3DFG9	A0A2H3DLX0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.668
A0A2H3DFG9	A0A2H3E2G6	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.709
A0A2H3DFG9	A0A2H3E3K8	Uncharacterized protein.	Uncharacterized protein.	0.668
A0A2H3DFG9	A0A2H3E3N4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.779
A0A2H3DFG9	A0A2H3E3U1	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.755
A0A2H3DFG9	A0A2H3E5G5	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A2H3DFG9	A0A2H3E7F4	Uncharacterized protein.	Small nuclear ribonucleo protein SmF.	0.756
A0A2H3DFG9	A0A2H3ECS2	Uncharacterized protein.	Uncharacterized protein.	0.684
A0A2H3DFG9	A0A2H3EK73	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.763
A0A2H3DJF4	A0A2H3DFG9	Uncharacterized protein.	Uncharacterized protein.	0.684
A0A2H3DJF4	A0A2H3DLX0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.937
A0A2H3DJF4	A0A2H3E3K8	Uncharacterized protein.	Uncharacterized protein.	0.937
A0A2H3DJF4	A0A2H3E3N4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.964
A0A2H3DJF4	A0A2H3E7F4	Uncharacterized protein.	Small nuclear ribonucleo protein SmF.	0.945
A0A2H3DJF4	A0A2H3EK73	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.957
A0A2H3DLX0	A0A2H3DFG9	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.668
A0A2H3DLX0	A0A2H3DJF4	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.937
A0A2H3DLX0	A0A2H3E2G6	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.485
A0A2H3DLX0	A0A2H3E3N4	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999