A0A2H3DTV4 protein (Armillaria gallica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2H3DTV4

PH domain-containing protein. (549 aa)

Predicted Functional Partners:

A0A2H3E874

0.890

A0A2H3EA29

0.888

A0A2H3E2C2

0.885

A0A2H3CKW2

0.884

A0A2H3EGF4

0.882

A0A2H3DP43

0.880

A0A2H3E7U1

0.874

A0A2H3E2P5

0.869

A0A2H3DRL5

0.868

A0A2H3E4H0

0.858

Your Current Organism:

Armillaria gallica

NCBI taxonomy Id: 47427
Other names: A. gallica, Armillaria bulbosa, Armillaria lutea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2H3CKW2	A0A2H3DP43	Initiation factor 2.	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.981
A0A2H3CKW2	A0A2H3DRL5	Initiation factor 2.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.958
A0A2H3CKW2	A0A2H3DTV4	Initiation factor 2.	PH domain-containing protein.	0.884
A0A2H3CKW2	A0A2H3E2C2	Initiation factor 2.	S15/NS1 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.970
A0A2H3CKW2	A0A2H3E2P5	Initiation factor 2.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.976
A0A2H3CKW2	A0A2H3E4H0	Initiation factor 2.	Uncharacterized protein.	0.948
A0A2H3CKW2	A0A2H3E7U1	Initiation factor 2.	Glucocorticoid receptor-like (DNA-binding domain).	0.983
A0A2H3CKW2	A0A2H3E874	Initiation factor 2.	Tyrosine--tRNA ligase.	0.593
A0A2H3CKW2	A0A2H3EA29	Initiation factor 2.	Ribosomal protein L15.	0.988
A0A2H3CKW2	A0A2H3EGF4	Initiation factor 2.	Ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.986
A0A2H3DP43	A0A2H3CKW2	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Initiation factor 2.	0.981
A0A2H3DP43	A0A2H3DRL5	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.995
A0A2H3DP43	A0A2H3DTV4	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	PH domain-containing protein.	0.880
A0A2H3DP43	A0A2H3E2C2	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	S15/NS1 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.995
A0A2H3DP43	A0A2H3E2P5	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.995
A0A2H3DP43	A0A2H3E4H0	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.994
A0A2H3DP43	A0A2H3E7U1	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Glucocorticoid receptor-like (DNA-binding domain).	0.996
A0A2H3DP43	A0A2H3E874	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Tyrosine--tRNA ligase.	0.611
A0A2H3DP43	A0A2H3EA29	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L15.	0.998
A0A2H3DP43	A0A2H3EGF4	Mitochondrial 50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.999