A0A2H3DUE8 protein (Armillaria gallica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2H3DUE8

Uncharacterized protein. (116 aa)

Predicted Functional Partners:

A0A2H3DF44

0.634

A0A2H3D439

0.533

A0A2H3ELX6

0.533

A0A2H3CW50

0.497

A0A2H3E1Y1

0.497

A0A2H3E514

0.497

A0A2H3EDZ1

0.470

A0A2H3DEZ0

0.446

A0A2H3E3D3

0.446

A0A2H3DN48

0.439

Your Current Organism:

Armillaria gallica

NCBI taxonomy Id: 47427
Other names: A. gallica, Armillaria bulbosa, Armillaria lutea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2H3CW50	A0A2H3D439	WD_REPEATS_REGION domain-containing protein.	BUB1 N-terminal domain-containing protein.	0.969
A0A2H3CW50	A0A2H3DEZ0	WD_REPEATS_REGION domain-containing protein.	Serine/threonine-protein kinase.	0.964
A0A2H3CW50	A0A2H3DF44	WD_REPEATS_REGION domain-containing protein.	Peptidase C50 domain-containing protein.	0.888
A0A2H3CW50	A0A2H3DN48	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.871
A0A2H3CW50	A0A2H3DUE8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.497
A0A2H3CW50	A0A2H3E3D3	WD_REPEATS_REGION domain-containing protein.	Plk4_PB1 domain-containing protein.	0.964
A0A2H3CW50	A0A2H3EDZ1	WD_REPEATS_REGION domain-containing protein.	Spindle assembly checkpoint protein.	0.985
A0A2H3CW50	A0A2H3ELX6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.969
A0A2H3D439	A0A2H3CW50	BUB1 N-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.969
A0A2H3D439	A0A2H3DEZ0	BUB1 N-terminal domain-containing protein.	Serine/threonine-protein kinase.	0.981
A0A2H3D439	A0A2H3DF44	BUB1 N-terminal domain-containing protein.	Peptidase C50 domain-containing protein.	0.912
A0A2H3D439	A0A2H3DN48	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.987
A0A2H3D439	A0A2H3DUE8	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.533
A0A2H3D439	A0A2H3E1Y1	BUB1 N-terminal domain-containing protein.	WD40 repeat-like protein.	0.977
A0A2H3D439	A0A2H3E3D3	BUB1 N-terminal domain-containing protein.	Plk4_PB1 domain-containing protein.	0.970
A0A2H3D439	A0A2H3E514	BUB1 N-terminal domain-containing protein.	WD40 repeat-like protein.	0.977
A0A2H3D439	A0A2H3EDZ1	BUB1 N-terminal domain-containing protein.	Spindle assembly checkpoint protein.	0.995
A0A2H3DEZ0	A0A2H3CW50	Serine/threonine-protein kinase.	WD_REPEATS_REGION domain-containing protein.	0.964
A0A2H3DEZ0	A0A2H3D439	Serine/threonine-protein kinase.	BUB1 N-terminal domain-containing protein.	0.981
A0A2H3DEZ0	A0A2H3DF44	Serine/threonine-protein kinase.	Peptidase C50 domain-containing protein.	0.993