A0A2H3E3C0 protein (Armillaria gallica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2H3E3C0

Uncharacterized protein. (388 aa)

Predicted Functional Partners:

A0A2H3CEG2

0.911

A0A2H3CGF0

0.886

A0A2H3EJE5

0.886

A0A2H3EQI8

0.886

A0A2H3DNJ1

0.857

A0A2H3ETU5

0.853

A0A2H3E5R3

0.851

A0A2H3DJX8

0.849

A0A2H3DUW6

0.849

A0A2H3E246

0.849

Your Current Organism:

Armillaria gallica

NCBI taxonomy Id: 47427
Other names: A. gallica, Armillaria bulbosa, Armillaria lutea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2H3CEG2	A0A2H3CGF0	RNA helicase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.871
A0A2H3CEG2	A0A2H3DJX8	RNA helicase.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.843
A0A2H3CEG2	A0A2H3DNJ1	RNA helicase.	U3 small nucleolar RNA-associated protein 22.	0.987
A0A2H3CEG2	A0A2H3DUW6	RNA helicase.	Sas10 domain-containing protein.	0.990
A0A2H3CEG2	A0A2H3E246	RNA helicase.	Nop14-like protein.	0.971
A0A2H3CEG2	A0A2H3E3C0	RNA helicase.	Uncharacterized protein.	0.911
A0A2H3CEG2	A0A2H3E5R3	RNA helicase.	DUF947-domain-containing protein.	0.987
A0A2H3CEG2	A0A2H3EJE5	RNA helicase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.871
A0A2H3CEG2	A0A2H3EQI8	RNA helicase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.871
A0A2H3CEG2	A0A2H3ETU5	RNA helicase.	Cell adhesion protein byn-1.	0.976
A0A2H3CGF0	A0A2H3CEG2	P-loop containing nucleoside triphosphate hydrolase protein.	RNA helicase.	0.871
A0A2H3CGF0	A0A2H3DJX8	P-loop containing nucleoside triphosphate hydrolase protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.928
A0A2H3CGF0	A0A2H3DNJ1	P-loop containing nucleoside triphosphate hydrolase protein.	U3 small nucleolar RNA-associated protein 22.	0.936
A0A2H3CGF0	A0A2H3DUW6	P-loop containing nucleoside triphosphate hydrolase protein.	Sas10 domain-containing protein.	0.977
A0A2H3CGF0	A0A2H3E246	P-loop containing nucleoside triphosphate hydrolase protein.	Nop14-like protein.	0.936
A0A2H3CGF0	A0A2H3E3C0	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.886
A0A2H3CGF0	A0A2H3E5R3	P-loop containing nucleoside triphosphate hydrolase protein.	DUF947-domain-containing protein.	0.515
A0A2H3CGF0	A0A2H3ETU5	P-loop containing nucleoside triphosphate hydrolase protein.	Cell adhesion protein byn-1.	0.920
A0A2H3DJX8	A0A2H3CEG2	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	RNA helicase.	0.843
A0A2H3DJX8	A0A2H3CGF0	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	P-loop containing nucleoside triphosphate hydrolase protein.	0.928