STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARMOST_03749DUF4211 domain-containing protein. (506 aa)    
Predicted Functional Partners:
ARMOST_04960
Uncharacterized protein.
   
 0.970
ARMOST_05650
TFIID_20kDa domain-containing protein.
   
 0.970
ARMOST_06933
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
   
 0.970
ARMOST_04694
TAFII28 domain-containing protein.
    
 0.969
ARMOST_05645
TAFII55_N domain-containing protein.
    
 0.969
ARMOST_05968
TAF4 domain-containing protein.
    
 0.969
ARMOST_08832
Related to TAF5-TFIID and SAGA subunit.
    
 0.969
ARMOST_09443
Related to TAF2-component of TFIID complex.
    
 0.969
ARMOST_09646
Related to TAF1-TFIID subunit (TBP-associated factor), 145 kD.
    
 0.969
ARMOST_11292
TAF domain-containing protein.
    
 0.969
Your Current Organism:
Armillaria ostoyae
NCBI taxonomy Id: 47428
Other names: A. ostoyae, Armillaria sp. NABS1, Armillariella ostoyae
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