ARMOST_09725 protein (Armillaria ostoyae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARMOST_09725

RNase H domain-containing protein. (331 aa)

Predicted Functional Partners:

ARMOST_13158

0.783

ARMOST_05010

0.694

ARMOST_10985

0.649

ARMOST_13427

0.649

ARMOST_14637

0.628

ARMOST_07749

0.611

ARMOST_01202

0.608

ARMOST_11069

0.606

ARMOST_03490

0.604

ARMOST_19187

0.591

Your Current Organism:

Armillaria ostoyae

NCBI taxonomy Id: 47428
Other names: A. ostoyae, Armillaria sp. NABS1, Armillariella ostoyae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMOST_01202	ARMOST_09725	A0A284QNB1	A0A284RCA6	Related to NPY1-NADH diphosphatase.	RNase H domain-containing protein.	0.608
ARMOST_03490	ARMOST_05010	A0A284QUM2	A0A284QZ06	Nucleoside diphosphate kinase.	Uncharacterized protein.	0.573
ARMOST_03490	ARMOST_07749	A0A284QUM2	A0A284R6P3	Nucleoside diphosphate kinase.	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	0.429
ARMOST_03490	ARMOST_09725	A0A284QUM2	A0A284RCA6	Nucleoside diphosphate kinase.	RNase H domain-containing protein.	0.604
ARMOST_03490	ARMOST_10985	A0A284QUM2	A0A284RFW4	Nucleoside diphosphate kinase.	Related to SIS2 protein (Cycle-specific gene control).	0.713
ARMOST_03490	ARMOST_11069	A0A284QUM2	A0A284RG38	Nucleoside diphosphate kinase.	NDK domain-containing protein.	0.429
ARMOST_03490	ARMOST_13427	A0A284QUM2	A0A284RMV8	Nucleoside diphosphate kinase.	Probable Thymidylate synthase.	0.713
ARMOST_03490	ARMOST_14637	A0A284QUM2	A0A284RR68	Nucleoside diphosphate kinase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.492
ARMOST_03490	ARMOST_19187	A0A284QUM2	A0A284S3V2	Nucleoside diphosphate kinase.	Probable ENO1-enolase I (2-phosphoglycerate dehydratase).	0.647
ARMOST_05010	ARMOST_03490	A0A284QZ06	A0A284QUM2	Uncharacterized protein.	Nucleoside diphosphate kinase.	0.573
ARMOST_05010	ARMOST_09725	A0A284QZ06	A0A284RCA6	Uncharacterized protein.	RNase H domain-containing protein.	0.694
ARMOST_05010	ARMOST_10985	A0A284QZ06	A0A284RFW4	Uncharacterized protein.	Related to SIS2 protein (Cycle-specific gene control).	0.418
ARMOST_05010	ARMOST_11069	A0A284QZ06	A0A284RG38	Uncharacterized protein.	NDK domain-containing protein.	0.658
ARMOST_05010	ARMOST_13158	A0A284QZ06	A0A284RLX3	Uncharacterized protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.440
ARMOST_05010	ARMOST_13427	A0A284QZ06	A0A284RMV8	Uncharacterized protein.	Probable Thymidylate synthase.	0.418
ARMOST_07749	ARMOST_03490	A0A284R6P3	A0A284QUM2	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	Nucleoside diphosphate kinase.	0.429
ARMOST_07749	ARMOST_09725	A0A284R6P3	A0A284RCA6	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	RNase H domain-containing protein.	0.611
ARMOST_07749	ARMOST_10985	A0A284R6P3	A0A284RFW4	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	Related to SIS2 protein (Cycle-specific gene control).	0.440
ARMOST_07749	ARMOST_11069	A0A284R6P3	A0A284RG38	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	NDK domain-containing protein.	0.577
ARMOST_07749	ARMOST_13427	A0A284R6P3	A0A284RMV8	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	Probable Thymidylate synthase.	0.440