Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARMOST_00932 | ARMOST_13177 | A0A284QMK5 | A0A284RLZ1 | Related to 4-coumarate--CoA ligase 1. | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | 0.459 |
ARMOST_00932 | MED10 | A0A284QMK5 | A0A284RP69 | Related to 4-coumarate--CoA ligase 1. | Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.826 |
ARMOST_00932 | MED17 | A0A284QMK5 | A0A284R064 | Related to 4-coumarate--CoA ligase 1. | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.747 |
ARMOST_03958 | ARMOST_13177 | A0A284QVZ5 | A0A284RLZ1 | Tryptophan synthase. | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | 0.624 |
ARMOST_07056 | ARMOST_13177 | A0A284R4Q6 | A0A284RLZ1 | Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family. | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | 0.565 |
ARMOST_11067 | ARMOST_13177 | A0A284RG41 | A0A284RLZ1 | Related to RAD50-DNA repair protein. | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | 0.521 |
ARMOST_11067 | ARMOST_13804 | A0A284RG41 | A0A284RNV6 | Related to RAD50-DNA repair protein. | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.999 |
ARMOST_11067 | ARMOST_15533 | A0A284RG41 | A0A284RTS0 | Related to RAD50-DNA repair protein. | 3'-5' exonuclease domain-containing protein. | 0.988 |
ARMOST_11067 | ARMOST_17245 | A0A284RG41 | A0A284RYK3 | Related to RAD50-DNA repair protein. | 3'-5' exonuclease domain-containing protein. | 0.988 |
ARMOST_11067 | ARMOST_21792 | A0A284RG41 | A0A284SB18 | Related to RAD50-DNA repair protein. | Uncharacterized protein. | 0.988 |
ARMOST_13177 | ARMOST_00932 | A0A284RLZ1 | A0A284QMK5 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | Related to 4-coumarate--CoA ligase 1. | 0.459 |
ARMOST_13177 | ARMOST_03958 | A0A284RLZ1 | A0A284QVZ5 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | Tryptophan synthase. | 0.624 |
ARMOST_13177 | ARMOST_07056 | A0A284RLZ1 | A0A284R4Q6 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family. | 0.565 |
ARMOST_13177 | ARMOST_11067 | A0A284RLZ1 | A0A284RG41 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | Related to RAD50-DNA repair protein. | 0.521 |
ARMOST_13177 | ARMOST_13804 | A0A284RLZ1 | A0A284RNV6 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.535 |
ARMOST_13177 | ARMOST_15533 | A0A284RLZ1 | A0A284RTS0 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | 3'-5' exonuclease domain-containing protein. | 0.528 |
ARMOST_13177 | ARMOST_17245 | A0A284RLZ1 | A0A284RYK3 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | 3'-5' exonuclease domain-containing protein. | 0.528 |
ARMOST_13177 | ARMOST_21792 | A0A284RLZ1 | A0A284SB18 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | Uncharacterized protein. | 0.528 |
ARMOST_13177 | MED10 | A0A284RLZ1 | A0A284RP69 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.477 |
ARMOST_13177 | MED17 | A0A284RLZ1 | A0A284R064 | Related to cytochrome P450 CYP2 subfamily; Belongs to the cytochrome P450 family. | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.477 |
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