STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJA58936.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)    
Predicted Functional Partners:
AJA58360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.919
AJA58380.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.901
AJA58608.1
Tetratricopeptide repeat domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.893
AJA58441.1
Tetratricopeptide repeat domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.892
AJA58335.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.886
greA
Transcript cleavage factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
 
     0.871
AJA58392.1
Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.848
AJA58843.1
Antigen, p83/100; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.789
fliD
Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
     0.787
AJA58564.1
Glutamate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
     0.784
Your Current Organism:
Borrelia miyamotoi
NCBI taxonomy Id: 47466
Other names: B. miyamotoi, Borrelia miyamotonii, Borrelia miyamotonis, JCM 9579, strain HT31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.