Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFS02664.1 | SFS04011.1 | SAMN05421771_0700 | SAMN05421771_0845 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | A/G-specific DNA-adenine glycosylase; Manually curated. | 0.690 |
| SFS02664.1 | SFS17039.1 | SAMN05421771_0700 | SAMN05421771_3034 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ATP-dependent DNA helicase RecQ. | 0.990 |
| SFS03869.1 | SFS04011.1 | SAMN05421771_0824 | SAMN05421771_0845 | Endonuclease-3. | A/G-specific DNA-adenine glycosylase; Manually curated. | 0.659 |
| SFS03869.1 | SFS17039.1 | SAMN05421771_0824 | SAMN05421771_3034 | Endonuclease-3. | ATP-dependent DNA helicase RecQ. | 0.401 |
| SFS03869.1 | nth | SAMN05421771_0824 | SAMN05421771_3088 | Endonuclease-3. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.662 |
| SFS03997.1 | SFS04005.1 | SAMN05421771_0843 | SAMN05421771_0844 | Soil-associated protein, TIGR03435 family. | Hypothetical protein. | 0.623 |
| SFS03997.1 | SFS04011.1 | SAMN05421771_0843 | SAMN05421771_0845 | Soil-associated protein, TIGR03435 family. | A/G-specific DNA-adenine glycosylase; Manually curated. | 0.425 |
| SFS04005.1 | SFS03997.1 | SAMN05421771_0844 | SAMN05421771_0843 | Hypothetical protein. | Soil-associated protein, TIGR03435 family. | 0.623 |
| SFS04005.1 | SFS04011.1 | SAMN05421771_0844 | SAMN05421771_0845 | Hypothetical protein. | A/G-specific DNA-adenine glycosylase; Manually curated. | 0.515 |
| SFS04011.1 | SFS02664.1 | SAMN05421771_0845 | SAMN05421771_0700 | A/G-specific DNA-adenine glycosylase; Manually curated. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.690 |
| SFS04011.1 | SFS03869.1 | SAMN05421771_0845 | SAMN05421771_0824 | A/G-specific DNA-adenine glycosylase; Manually curated. | Endonuclease-3. | 0.659 |
| SFS04011.1 | SFS03997.1 | SAMN05421771_0845 | SAMN05421771_0843 | A/G-specific DNA-adenine glycosylase; Manually curated. | Soil-associated protein, TIGR03435 family. | 0.425 |
| SFS04011.1 | SFS04005.1 | SAMN05421771_0845 | SAMN05421771_0844 | A/G-specific DNA-adenine glycosylase; Manually curated. | Hypothetical protein. | 0.515 |
| SFS04011.1 | SFS11636.1 | SAMN05421771_0845 | SAMN05421771_1997 | A/G-specific DNA-adenine glycosylase; Manually curated. | ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family. | 0.501 |
| SFS04011.1 | SFS15586.1 | SAMN05421771_0845 | SAMN05421771_2739 | A/G-specific DNA-adenine glycosylase; Manually curated. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.461 |
| SFS04011.1 | SFS15719.1 | SAMN05421771_0845 | SAMN05421771_2767 | A/G-specific DNA-adenine glycosylase; Manually curated. | 8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family. | 0.588 |
| SFS04011.1 | SFS17039.1 | SAMN05421771_0845 | SAMN05421771_3034 | A/G-specific DNA-adenine glycosylase; Manually curated. | ATP-dependent DNA helicase RecQ. | 0.468 |
| SFS04011.1 | metK | SAMN05421771_0845 | SAMN05421771_0314 | A/G-specific DNA-adenine glycosylase; Manually curated. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.468 |
| SFS04011.1 | nth | SAMN05421771_0845 | SAMN05421771_3088 | A/G-specific DNA-adenine glycosylase; Manually curated. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.639 |
| SFS11636.1 | SFS04011.1 | SAMN05421771_1997 | SAMN05421771_0845 | ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family. | A/G-specific DNA-adenine glycosylase; Manually curated. | 0.501 |
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