STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS13603.1Sugar phosphate isomerase/epimerase. (286 aa)    
Predicted Functional Partners:
SFS03984.1
Tat (twin-arginine translocation) pathway signal sequence.
  
 
  0.818
SFS13005.1
Predicted dehydrogenase.
  
 
  0.816
SFS21330.1
Predicted dehydrogenase.
 
 
  0.810
SFS17575.1
Predicted dehydrogenase.
  
 
  0.794
SFS17491.1
Predicted dehydrogenase.
  
 
  0.758
SFS12868.1
Hypothetical protein.
  
     0.752
SFS03990.1
Methane oxygenase PmoA.
  
    0.751
SFR98224.1
Hypothetical protein.
  
     0.749
SFS18230.1
Predicted dehydrogenase.
  
 
  0.742
SFS21085.1
Hypothetical protein.
  
     0.738
Your Current Organism:
Granulicella pectinivorans
NCBI taxonomy Id: 474950
Other names: Acidobacteria bacterium TPB6011, DSM 21001, G. pectinivorans, Granulicella pectinivorans Pankratov and Dedysh 2010, VKM B-2509, strain TPB6011
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.