STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS18169.1Ni/Fe-hydrogenase 2 integral membrane subunit HybB. (440 aa)    
Predicted Functional Partners:
SFS02227.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
  
 0.998
SFS18166.1
[NiFe]-hydrogenase II apoprotein, ferredoxin-type subunit.
 0.998
SFS05069.1
Anaerobic selenocysteine-containing dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.963
SFS18163.1
Hydrogenase small subunit.
 
  
 0.946
SFS18172.1
Hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.940
SFS02237.1
Cytochrome c7.
   
 0.924
SFS05716.1
Cytochrome c, mono-and diheme variants.
   
 0.924
SFS18174.1
Hydrogenase maturation protease.
 
  
 0.887
SFS02180.1
Quinol:cytochrome c oxidoreductase quinone-binding subunit 2.
  
 
 0.885
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.885
Your Current Organism:
Granulicella pectinivorans
NCBI taxonomy Id: 474950
Other names: Acidobacteria bacterium TPB6011, DSM 21001, G. pectinivorans, Granulicella pectinivorans Pankratov and Dedysh 2010, VKM B-2509, strain TPB6011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.