STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS18683.1Carboxymethylenebutenolidase. (228 aa)    
Predicted Functional Partners:
SFS14244.1
Carboxymethylenebutenolidase.
  
  
 
0.700
SFS17845.1
Carboxymethylenebutenolidase.
  
  
  0.650
SFS18686.1
Endo-1,4-beta-xylanase.
       0.623
SFS18688.1
Hypothetical protein.
       0.623
SFS18691.1
Flagellar hook-associated protein 3 FlgL.
       0.537
flgK
Flagellar hook-associated protein 1 FlgK.
       0.537
SFS18699.1
Hypothetical protein.
       0.537
SFS18702.1
Anti-sigma-28 factor, FlgM family.
       0.472
rpsO
SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.461
SFS15144.1
2-keto-4-pentenoate hydratase.
  
     0.433
Your Current Organism:
Granulicella pectinivorans
NCBI taxonomy Id: 474950
Other names: Acidobacteria bacterium TPB6011, DSM 21001, G. pectinivorans, Granulicella pectinivorans Pankratov and Dedysh 2010, VKM B-2509, strain TPB6011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.