STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS20689.1Hypothetical protein/modulator of FtsH protease; Belongs to the BI1 family. (221 aa)    
Predicted Functional Partners:
SFS20687.1
Amino acid/polyamine/organocation transporter, APC superfamily; Non-canonical start codon; manually curated.
       0.714
SFS05270.1
Predicted O-methyltransferase YrrM.
 
     0.701
SFS02848.1
Phage portal protein, HK97 family.
  
     0.697
SFS18324.1
Hypothetical protein.
  
     0.684
SFS03205.1
Hypothetical protein.
  
    0.657
SFS20691.1
Hypothetical protein.
       0.615
SFS15201.1
Hypothetical protein.
  
     0.614
SFS07850.1
Hypothetical protein.
  
     0.606
SFS16789.1
O-antigen ligase.
  
     0.594
SFS15329.1
Type IV secretion system protein VirB4.
  
     0.586
Your Current Organism:
Granulicella pectinivorans
NCBI taxonomy Id: 474950
Other names: Acidobacteria bacterium TPB6011, DSM 21001, G. pectinivorans, Granulicella pectinivorans Pankratov and Dedysh 2010, VKM B-2509, strain TPB6011
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