Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR98068.1 | SFS21354.1 | SAMN05421771_0213 | SAMN05421771_4158 | Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family. | HEAT repeat. | 0.455 |
SFS16415.1 | SFS21354.1 | SAMN05421771_2909 | SAMN05421771_4158 | 2-oxoisovalerate dehydrogenase E1 component. | HEAT repeat. | 0.696 |
SFS16415.1 | eno | SAMN05421771_2909 | SAMN05421771_3039 | 2-oxoisovalerate dehydrogenase E1 component. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.799 |
SFS16415.1 | tpiA | SAMN05421771_2909 | SAMN05421771_3512 | 2-oxoisovalerate dehydrogenase E1 component. | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.770 |
SFS21221.1 | SFS21354.1 | SAMN05421771_4096 | SAMN05421771_4158 | Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family. | HEAT repeat. | 0.455 |
SFS21352.1 | SFS21354.1 | SAMN05421771_4157 | SAMN05421771_4158 | Magnesium chelatase family protein. | HEAT repeat. | 0.514 |
SFS21352.1 | SFS21356.1 | SAMN05421771_4157 | SAMN05421771_4159 | Magnesium chelatase family protein. | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | 0.506 |
SFS21352.1 | SFS21358.1 | SAMN05421771_4157 | SAMN05421771_4160 | Magnesium chelatase family protein. | Hypothetical protein. | 0.424 |
SFS21354.1 | SFR98068.1 | SAMN05421771_4158 | SAMN05421771_0213 | HEAT repeat. | Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family. | 0.455 |
SFS21354.1 | SFS16415.1 | SAMN05421771_4158 | SAMN05421771_2909 | HEAT repeat. | 2-oxoisovalerate dehydrogenase E1 component. | 0.696 |
SFS21354.1 | SFS21221.1 | SAMN05421771_4158 | SAMN05421771_4096 | HEAT repeat. | Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family. | 0.455 |
SFS21354.1 | SFS21352.1 | SAMN05421771_4158 | SAMN05421771_4157 | HEAT repeat. | Magnesium chelatase family protein. | 0.514 |
SFS21354.1 | SFS21356.1 | SAMN05421771_4158 | SAMN05421771_4159 | HEAT repeat. | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | 0.683 |
SFS21354.1 | SFS21358.1 | SAMN05421771_4158 | SAMN05421771_4160 | HEAT repeat. | Hypothetical protein. | 0.639 |
SFS21354.1 | efp | SAMN05421771_4158 | SAMN05421771_0650 | HEAT repeat. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.903 |
SFS21354.1 | efp-2 | SAMN05421771_4158 | SAMN05421771_4293 | HEAT repeat. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.903 |
SFS21354.1 | eno | SAMN05421771_4158 | SAMN05421771_3039 | HEAT repeat. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.418 |
SFS21354.1 | tpiA | SAMN05421771_4158 | SAMN05421771_3512 | HEAT repeat. | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.413 |
SFS21356.1 | SFS21352.1 | SAMN05421771_4159 | SAMN05421771_4157 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Magnesium chelatase family protein. | 0.506 |
SFS21356.1 | SFS21354.1 | SAMN05421771_4159 | SAMN05421771_4158 | L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. | HEAT repeat. | 0.683 |
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