STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM48306.1N-acetylmuramoyl-L-alanine amidase. (148 aa)    
Predicted Functional Partners:
SEM48332.1
Hypothetical protein.
 
    0.948
SEM85529.1
Germination protein YpeB.
 
  
 0.834
SEN06022.1
Spore germination protein KB.
  
    0.729
SEM62813.1
Spore germination protein KB.
  
    0.726
SEN06063.1
Spore germination protein KC.
  
    0.685
SEM62842.1
Spore germination protein KC.
  
    0.678
SEM52264.1
Protein-glutamine gamma-glutamyltransferase.
  
   
 0.667
SEM58615.1
Hypothetical protein.
  
     0.582
SEM56350.1
DnaJ domain-containing protein.
  
     0.569
SEN00956.1
Hypothetical protein.
  
     0.566
Your Current Organism:
Hydrogenoanaerobacterium saccharovorans
NCBI taxonomy Id: 474960
Other names: AS 1.5070, Clostridium sp. SW512, Clostridium sp. W72, H. saccharovorans, Hydrogenoanaerobacterium saccharovorans Song and Dong 2009, JCM 14861, strain SW512
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