STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM54192.1Two-component system, response regulator, stage 0 sporulation protein A. (261 aa)    
Predicted Functional Partners:
SEM54214.1
PAS domain S-box-containing protein.
 
  
 0.988
SEM79631.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
     
 0.831
SEN10834.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
     
 0.831
SEN13062.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
  0.758
SEM79752.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
  0.751
SEM79901.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
  0.751
SEN07366.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
  0.747
SEM49788.1
Signal transduction histidine kinase.
  
  
  0.746
SEM79782.1
Signal transduction histidine kinase.
  
  
 0.736
SEM76906.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.718
Your Current Organism:
Hydrogenoanaerobacterium saccharovorans
NCBI taxonomy Id: 474960
Other names: AS 1.5070, Clostridium sp. SW512, Clostridium sp. W72, H. saccharovorans, Hydrogenoanaerobacterium saccharovorans Song and Dong 2009, JCM 14861, strain SW512
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