STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM61360.1Spore germination protein. (427 aa)    
Predicted Functional Partners:
SEM62842.1
Spore germination protein KC.
  
     0.636
SEM83698.1
YD repeat-containing protein.
  
 
  0.624
SEN00391.1
RHS repeat-associated core domain-containing protein.
  
 
  0.624
SEN00489.1
RHS repeat-associated core domain-containing protein.
  
 
  0.624
SEN06063.1
Spore germination protein KC.
  
     0.603
SEM62813.1
Spore germination protein KB.
  
     0.539
SEM62864.1
Spore germination protein KA.
  
     0.531
SEN06094.1
Spore germination protein KA.
  
     0.530
SEM68655.1
Peptidase family M23.
  
     0.528
SEM85529.1
Germination protein YpeB.
  
  
 0.479
Your Current Organism:
Hydrogenoanaerobacterium saccharovorans
NCBI taxonomy Id: 474960
Other names: AS 1.5070, Clostridium sp. SW512, Clostridium sp. W72, H. saccharovorans, Hydrogenoanaerobacterium saccharovorans Song and Dong 2009, JCM 14861, strain SW512
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.