STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM98703.1DNA-binding transcriptional regulator, Lrp family. (159 aa)    
Predicted Functional Partners:
SEM98707.1
Aminotransferase.
 
  
 0.961
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
   
 
 0.861
SEM94265.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.842
SEM69685.1
PTS system IIA component, Glc family.
   
 
  0.814
SEM65275.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.724
SEM98737.1
Uncharacterized conserved protein, DUF362 family.
     
 0.672
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.672
SEM54686.1
Dihydrolipoamide dehydrogenase.
   
 
 0.591
SEM72997.1
Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family.
  
 
 0.549
SEM98681.1
Histidinol-phosphatase (PHP family); Belongs to the PHP hydrolase family. HisK subfamily.
  
    0.547
Your Current Organism:
Hydrogenoanaerobacterium saccharovorans
NCBI taxonomy Id: 474960
Other names: AS 1.5070, Clostridium sp. SW512, Clostridium sp. W72, H. saccharovorans, Hydrogenoanaerobacterium saccharovorans Song and Dong 2009, JCM 14861, strain SW512
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.