STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC57754.1Galactonate dehydratase. (388 aa)    
Predicted Functional Partners:
SMC87321.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.762
SMC57742.1
Hypothetical protein.
 
   
 0.690
SMC57759.1
Hypothetical protein.
       0.658
SMC57764.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.613
SMC57750.1
Sugar phosphate permease.
     
 0.589
SMC57746.1
3-oxoacyl-[acyl-carrier-protein] reductase.
    
 0.587
SMC57738.1
SusD family protein.
 
     0.544
SMD18417.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.465
SMC73321.1
L-alanine-DL-glutamate epimerase.
  
     0.460
SMC57735.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.447
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.