STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC59603.1Putative ABC transport system ATP-binding protein. (209 aa)    
Predicted Functional Partners:
SMC59592.1
Putative ABC transport system permease protein.
 
 0.996
SMC82523.1
Putative ABC transport system permease protein.
 0.995
SMD16507.1
Putative ABC transport system permease protein.
 0.994
SMC52295.1
Lipoprotein-releasing system permease protein.
  
 0.971
SMD04668.1
Lipoprotein-releasing system permease protein.
  
 0.971
SMC98404.1
Chaperone LolA.
   
 
 0.938
SMC59584.1
Hypothetical protein.
 
  
 0.882
SMC59573.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
  
 0.803
SMD09297.1
ABC-type multidrug transport system, ATPase component.
 
     0.701
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
  
 
0.676
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.