STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC60327.1Hypothetical protein. (155 aa)    
Predicted Functional Partners:
SMD08491.1
Methylamine utilisation protein MauE.
  
     0.774
SMC60336.1
Hypothetical protein.
       0.773
SMC98169.1
Hypothetical protein.
  
     0.767
SMC98093.1
Hypothetical protein.
  
     0.763
SMC60943.1
SusD family protein.
  
     0.759
SMC60953.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.744
SMC98103.1
SusD family protein.
  
     0.741
SMC98182.1
SusD family protein.
  
     0.734
SMC98113.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.721
SMC98190.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.718
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.