STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC60364.1TonB-linked outer membrane protein, SusC/RagA family. (1066 aa)    
Predicted Functional Partners:
SMC60358.1
SusD family protein.
 
 
   0.955
SMC54741.1
SusD family protein.
  
 
   0.815
SMC54866.1
SusD family protein.
  
 
   0.815
SMC56508.1
Starch-binding associating with outer membrane.
  
 
   0.815
SMC90238.1
SusD family protein.
  
 
   0.815
SMD01272.1
SusD family protein.
  
 
   0.815
SMD01338.1
SusD family protein.
  
 
   0.815
SMD08460.1
SusD family protein.
  
 
   0.815
SMD13402.1
SusD family protein.
  
 
   0.812
SMC58390.1
SusD family protein.
  
 
   0.809
Your Current Organism:
Pedobacter nyackensis
NCBI taxonomy Id: 475255
Other names: DSM 19625, LMG 24260, LMG:24260, P. nyackensis, Pedobacter nyackensis Gordon et al. 2009, strain NWG-II14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.